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    <title>jebl.evolution.align package</title>
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Provides classes and interfaces for pairwise alignment of two sequences.
All major algorithms including Smith-Waterman and Needleman-Wunsch
are implemented.
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Some of the classes in this package are based on source code by Peter Sestoft, sestoft@dina.kvl.dk.
His original source code can be at
<a href="http://www.dina.kvl.dk/~sestoft/bsa.html">http://www.dina.kvl.dk/~sestoft/bsa.html</a>
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